Using genomic relationship likelihood for parentage assignment
نویسندگان
چکیده
منابع مشابه
Reconstruction of Ancestral Genomic Sequences Using Likelihood
A challenging task in computational biology is the reconstruction of genomic sequences of extinct ancestors, given the phylogenetic tree and the sequences at the leafs. This task is best solved by calculating the most likely estimate of the ancestral sequences, along with the most likely edge lengths. We deal with this problem and also the variant in which the phylogenetic tree in addition to t...
متن کاملComputationally efficient sibship and parentage assignment from multilocus marker data.
Quite a few methods have been proposed to infer sibship and parentage among individuals from their multilocus marker genotypes. They are all based on Mendelian laws either qualitatively (exclusion methods) or quantitatively (likelihood methods), have different optimization criteria, and use different algorithms in searching for the optimal solution. The full-likelihood method assigns sibship an...
متن کاملParentage analysis using RAPD PCR.
DNA variation from randomly amplified polymorphic DNA (RAPD) (1, 2) has recently been helpful in addressing a wide range of evolutionary problems including the determination of paternity and maternity (3). It has been greeted with particular enthusiasm because it is fast, technically easy and requires little material (4). By using single 10 base primers of arbitrary sequences to amplify DNA wit...
متن کاملA High Throughput Single Nucleotide Polymorphism Multiplex Assay for Parentage Assignment in New Zealand Sheep
Accurate pedigree information is critical to animal breeding systems to ensure the highest rate of genetic gain and management of inbreeding. The abundance of available genomic data, together with development of high throughput genotyping platforms, means that single nucleotide polymorphisms (SNPs) are now the DNA marker of choice for genomic selection studies. Furthermore the superior qualitie...
متن کاملComparative assessment of SNPs and microsatellites for fingerprinting, parentage and assignment testing in species of Eucalyptus
Background Brazil stands on the international scenario by having one of the largest natural forest heritage and extensive sustainable planted forests. Brazilian planted forestry is based mainly on fast growing eucalyptus and pines, with the pulp, paper and steel industries as the major consumers. Introduced commercially in Brazil in the early twentieth century, the eucalypts have experienced in...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
ژورنال
عنوان ژورنال: Genetics Selection Evolution
سال: 2018
ISSN: 1297-9686
DOI: 10.1186/s12711-018-0397-7